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Large Language Models Encode Clinical Knowledge

Karan Singhal, Shekoofeh Azizi, Tao Tu

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S. Sara Mahdavi, Jason Wei, Hyung Won Chung, Nathan Scales, Ajay Tanwani, Heather Cole-Lewis, Stephen Pfohl, Perry Payne, Martin Seneviratne, Paul Gamble, Chris Kelly, Nathaneal Scharli, Aakanksha Chowdhery, Philip Mansfield, Blaise Aguera y Arcas, Dale Webster, Greg S. Corrado, Yossi Matias, Katherine Chou, Juraj Gottweis, Nenad Tomasev, Yun Liu, Alvin Rajkomar, Joelle Barral, Christopher Semturs, Alan Karthikesalingam, Vivek Natarajan

2022 · arXiv

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From the abstract

Large language models (LLMs) have demonstrated impressive capabilities in natural language understanding and generation, but the quality bar for medical and clinical applications is high. Today, attempts to assess models' clinical knowledge typically rely on automated evaluations on limited benchmarks. There is no standard to evaluate model predictions and reasoning across a breadth of tasks. To address this, we present MultiMedQA, a benchmark combining six existing open question answering datasets spanning professional medical exams, research, and consumer queries; and HealthSearchQA, a new free-response dataset of medical questions searched online. We propose a framework for human evaluation of model answers along multiple axes including factuality, precision, possible harm, and bias. In addition, we evaluate PaLM (a 540-billion parameter LLM) and its instruction-tuned variant, Flan-PaLM, on MultiMedQA. Using a combination of prompting strategies, Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset (MedQA, MedMCQA, PubMedQA, MMLU clinical topics), including 67.6% accuracy on MedQA (US Medical License Exam questions), surpassing prior state-of-the-art by over 17%. However, human evaluation reveals key gaps in Flan-PaLM responses. To resolve this we introduce instruction prompt tuning, a parameter-efficient approach for aligning LLMs to new domains using a few exemplars. The resulting model, Med-PaLM, performs encouragingly, but remains inferior to clinicians. We show that comprehension, recall of knowledge, and medical reasoning improve with model scale and instruction prompt tuning, suggesting the potential utility of LLMs in medicine. Our human evaluations reveal important limitations of today's models, reinforcing the importance of both evaluation frameworks and method development in creating safe, helpful LLM models for clinical applications.

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4 selected excerpts · 4 total mentions

FlyingLawnmower
Neutral mention · rule
Late to the thread here, but the paper announcing Med-PaLM (https://arxiv.org/abs/2212.13138) does not report many benchmark results on Med-PaLM and is instead mostly about Flan-PaLM 540B (which is compared against in this paper). I am curious if any other Med-PaLM benchmarks have been published but I don't believe it is currently possible to do any further comparison against Med-PaLM given that the model is not public and no other open benchmark results are reported in the original Med-PaLM paper.
aix1
Neutral mention · rule
One thing that jumps out is that the paper fails to provide a proper direct comparison with Med-PaLM, only mentioning the latter in passing almost as an afterthought. Looking at arXiv timestamps, the Med-PaLM preprint has been out of three months (given the rate at which this field moves, an eternity). I understand Med-PaLM the current state of the art and would be a natural point of comparison. https://arxiv.org/abs/2212.13138
nopinsight
Neutral mention · rule
Related: "Large Language Models Encode Clinical Knowledge" https://arxiv.org/abs/2212.13138 "On the MedQA dataset consisting of USMLE style questions with 4 options, our Flan-PaLM 540B model achieved a multiple-choice question (MCQ) accuracy of 67.6%..." "The percentages of correctly answered items required to pass varies by Step and from form to form within each Step. However, examinees typically must answer approximately 60 percent of items correctly to achieve a passing score." -- https://www.usmle.org/bulletin-information/scoring-and-score... . It seems like the models in the paper could pass USMLE already. Some tests suggest that Med-PaLM is close to human clinicians in many aspects (Figures 6-7). Other tests show that Med-PaLM still return inappropriate/incorrect results much more often than clinicians do, however (Figure 8).

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