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The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Michael Worobey, Joshua I. Levy, Lorena Malpica Serrano

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Alexander Crits-Christoph, Jonathan E. Pekar, Stephen A. Goldstein, Angela L. Rasmussen, Moritz U. G. Kraemer, Chris Newman, Marion P. G. Koopmans, Marc A. Suchard, Joel O. Wertheim, Philippe Lemey, David L. Robertson, Robert F. Garry, Edward C. Holmes, Andrew Rambaut, Kristian G. Andersen

2022 · Science

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From the abstract

Understanding how severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged in 2019 is critical to preventing future zoonotic outbreaks before they become the next pandemic. The Huanan Seafood Wholesale Market in Wuhan, China, was identified as a likely source of cases in early reports, but later this conclusion became controversial. We show here that the earliest known COVID-19 cases from December 2019, including those without reported direct links, were geographically centered on this market. We report that live SARS-CoV-2–susceptible mammals were sold at the market in late 2019 and that within the market, SARS-CoV-2–positive environmental samples were spatially associated with vendors selling live mammals. Although there is insufficient evidence to define upstream events, and exact circumstances remain obscure, our analyses indicate that the emergence of SARS-CoV-2 occurred through the live wildlife trade in China and show that the Huanan market was the epicenter of the COVID-19 pandemic.

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15 selected excerpts · 15 total mentions

timr
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> Evidence suggest that patient zero was someone in the Wuhan market, around november 2019, and the SARS-CoV-2 genetic "signatures" where all found in wild animals for sale in that market. You're just repeating the conclusions of papers that made ridiculous leaps of logic based on circumstantial evidence. For example [1], which is the likely source of the argument you're (mis-)remembering, bases this conclusion on: 1) case histories from reported, hospitalized cases, which were probably incorrect (i.e. they just assume that the cases they know about are, in fact, the first cases), being "geographically centered" on the market in December (not November) of 2019 [2]. 2)…
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positive environmental samples near animal stalls in the market, of which they found two strains. Neither of which is dispositive of anything, and more an indictment of the motivated reasoning of the academic literature at the time than anything else. If you bother to read any of the subsequent analyses, you'll find that there are a bunch of different lines of evidence (genetic and case reports, at the least), pushing the date of the first infections well before December. In short, the first/WHO case reports were probably wrong, the virus likely broke out earlier and was circulating in Wuhan before these samples were taken. If that's true, it wouldn't be surprising, at all, to find positive environmental samples in a food market, and the tortured logic of this paper would fall apart. [1] https://www.science.org/doi/10.1126/science.abp8715 [2] Seriously. Not joking. Here's the "methods" they used for this oh-so-rigorous analysis: > The 2021 WHO mission report identified 174 COVID-19 cases in Hubei Province in December 2019 after careful examination of reported case histories (7). Although geographical coordinates of the residential locations of the 164 cases who lived within Wuhan were unavailable, we were able to reliably extract the latitude and longitude coordinates of 155 cases from maps in the report They then take this data and blend it through a kernel analysis, wave their hands, and voilá! This this The Science (tm) upon which your confidence is based. ...oh, and by the way: the market in question just happens to be right next to the Wuhan CDC, and a major city hospital [3]. Weird, right? I'm sure it's just a coincidence. Certainly nothing worth including in a putative "probability analysis" of geographic distribution. [3] https://www.researchgate.net/figure/Map-of-Huanan-Seafood-Ma...
DiogenesKynikos
Neutral mention · rule
This is the definitive study that shows the epicenter of the Wuhan outbreak was the Huanan Seafood Market: Worobey et al. (2022), in the journal Science [0]. This is a study that discusses the genetic evidence that there were multiple spillovers at the market: Pekar et al. (2022), also in the journal Science [1]. The above two findings are completely inconsistent with the idea of a lab leak. Why would a lab leak cause an outbreak at a market that sells wild animals, of all places? And how would it cause two different lineages of virus to emerge at that market? If you know how the original SARS spilled over, in wild animal markets in a major Chinese city (Guangzhou, far…
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away from where the bats that carry SARS live), the Wuhan Seafood Market spillover looks nearly identical - just 17 years later. Meanwhile, no evidence at all has emerged that the Wuhan Institute of Virology had anything to do with the emergence of SARS-CoV-2. Scientists at the WIV were regularly publishing and giving talks about exactly what they were working on, and they never mentioned anything closely related to SARS-CoV-2. They were working with viruses much closer to the original SARS, which is what most people back then were interested in. After SARS-CoV-2 emerged, you could actually go back and look into the WIV's publications to find the most closely related virus. It's called RaTG13, and it was published by scientists at the WIV all the way back in 2014. However, it's way too distantly related to SARS-CoV-2 to be the progenitor virus, and in fact, more closely related viruses have since been found by a French team in Laos. Basically, all the evidence about who knew what when, the genetics of more closely related viruses that have been discovered since the pandemic began argue positively that the WIV had nothing to do with the origins of the pandemic. This is in addition to the strong evidence that the initial outbreak was not at WIV, but rather at a wild animal market (which is exactly what you'd expect for a natural spillover). None of this has made its way into the American public's consciousness, though. 0. https://doi.org/10.1126/science.abp8715 1. https://doi.org/10.1126/science.abp8337
pcrh
Neutral mention · rule
They may be referring to the study below [0]. This showed that several genetic variants (lineages) of SARS-CoV2 were identified in infected people associated with the market, indicating 1) that the virus was already circulating among people before the epidemic took off, and 2) that there was more than one transmission event. Note that no comparable data associates SARS-CoV2 with the lab in Wuhan. [0] The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic https://www.science.org/doi/full/10.1126/science.abp8715 >we inferred separate introductions of SARS-CoV-2 lineages A and B into humans from likely infected animals at the Huanan…
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market (38). We estimated the first COVID-19 case to have occurred in November 2019, with few human cases and hospitalizations occurring through mid-December. [...] the evidence presented here that lineage A, like lineage B, may have originated at the Huanan market and then spread from this epicenter into the neighborhoods surrounding the market and beyond.
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eesmith
Neutral mention · rule
> I'm talking about prevailing attitudes I disagree. You are presenting strawman attitudes, representing an extreme interpretation of the past. Exactly what you accuse me of. Except I cited counter-examples. Even your example of "possible to be skeptical and critical of the labs handling of the virus" has strong issues because when the general scientific consensus is along the lines "Although there is insufficient evidence to define upstream events, and exact circumstances remain obscure, our analyses indicate that the emergence of SARS-CoV-2 occurred through the live wildlife trade in China and show that the Huanan market was the epicenter of the COVID-19 pandemic. ....…
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Several lines of evidence support the hypothesis that the Huanan market was the epicenter of the COVID-19 pandemic and that SARS-CoV-2 emerged from activities associated with the live wildlife trade there." https://www.science.org/doi/10.1126/science.abp8715 . The general response to the lab leak hypothesis is "where's the evidence"? Not "you're racist". > This was culturally marked in the show Halt and Catch Fire. A show made, what, 25 years after the era it describes? Do you know about "Kirk Drift"? The Kirk of the original series is not the womanizer people remember him to be. http://strangehorizons.com/non-fiction/columns/freshly-remem... Why do you think Halt and Catch Fire accurately describes things, rather than being subject to its own sense of drift? While my own pop culture example comes from the era you describe. Here's another 1991 quote, from Lippman's C++ Primer: """Object-oriented programming is an evolutionary advance in the design and management of large software systems. It is not, however, the deus ex machina come forth to resolve the many ills of the software industry.""" - https://archive.org/details/cprimer0000lipp/page/530/mode/2u... That's in the section titled "Living in a Multi-Paradigm Universe".
BryantD
Neutral mention · rule
Just to be clear, there weren’t animal samples available for testing. It’s not that they tested a bunch of animals and didn’t find covid. I know that’s what you meant but not everyone is familiar with the paper and it’s important to be meticulous here. https://www.science.org/doi/10.1126/science.abp8715
igouy
Neutral mention · rule
>… outside of the lab would disprove lab leak Might someone still claim — transferred without infection beyond the lab? Given the available evidence how would "Confirming zooinosis outside of the lab" be done? > Finding the animal reservoir… In bats? In intermediary animals? Apparently "No reports are known to be available for SARS-CoV-2 test results from these mammals at the Huanan market" and "we do not have access to any live animal samples from relevant species" and "The animals on these farms (nearly 1 million) were rapidly released, sold, or killed in early 2020 … apparently without testing for SARS-CoV-2 … Live animals sold at the market … were apparently not…
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sampled either." https://www.science.org/doi/10.1126/science.abp8715 > … how to prove they haven't tampered… So even "a proper investigation" will be insufficient. > … every day the natural source isn't found should increase the odds… Hardly. Let's make a wild ass guess that vastly more resources are being focused on the next Tampa Bay Buccaneers NFL game, than on finding "the natural source". What if "the natural source" was destroyed as part of the tear-down of that particular live animal trade?
masswerk
Neutral mention · rule
Hum, there are a few things promoters of the lab theory haven't accounted for: meanwhile, strains that are closer related to the wild type have been found in Laos and Vietnam and the Wuhan lab didn't sample there; the (in)famous Huanan Seafood Wholesale Market is actually quite a distance from the Wuhan Institute of Virology (it's about half an hour by car and there's a river in between) and there have been no traces found related to this route or to the geographical and/or social vicinity of the lab. Meanwhile, there has been quite a number of reportings (on two studies) severely undermining the lab leak theory. Generally speaking, these (US) studies claim to have…
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genetic evidence for an animal-human-animal-human transfer in Nov. 2019 at the wet market and swab samples of cages tested positive for SARS-CoV-2. Here's a sample: [1] https://www.science.org/doi/10.1126/science.abp8715 [2] https://www.openaccessgovernment.org/covid-19-originated-at-... [3] https://www.bbc.com/news/science-environment-62307383 [4] https://www.newsweek.com/wuhan-lab-leak-theory-undermined-ne... (For me, there are political motives too strong behind the lab leak theory, to accept a mere conjecture that fails to connect the dots. Grave accusations require proof. Especially, if you haven't ruled out contradicting candidates.)
tynpeddler
Neutral mention · rule
What is often missed is that chimeric viruses are easy to detect. The viral genome will show clear evidence of manipulation from random base insertions and clear homology with all the ancestral viruses. Hiding the signs of manipulation would either require vast amounts of time and resources (the expense and man power would make it very difficult to hide) or straight up science fiction technology. The chimeric origin hypothesis is not a plausible explanation for the origin of sars-cov2, which means the nature link is not relevant. The other lab leak hypothesis is that a specimen collected and cultured by scientists, infected a lab employee and this patient zero then…
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transmitted the virus to others. This is a plausible option, and it is being researched. However it is less plausible than wild transmission based on a simple numbers game. What is more likely, a breakout infection cause by a dozen scientists specifically trained and equipped against this possibility, or a transmission to one of the millions of other people who routinely interact with these bat populations? Both are possible, but one is much more likely. Before covid19, WIV had published research indicating that novel coronaviruses routinely jump from bats to humans in that part of the world. Most of these viruses aren't don't last in human hosts, but it's clear that it was only a matter time before something nasty got through. After all, it's already happened once before. The real nail in the coffin is that research[0] has shown that there were at least two, independent transmissions of sars-cov2 to humans. For this to happen as part of a lab leak it would require WIV to have found and cultivated 2 different strains of sars-cov2, and then each of those strains would have to escape the lab. [0] https://www.science.org/doi/10.1126/science.abp8715
pcrh
Neutral mention · rule
After a quick read of the article, it presents no new data, and is replete with innuendo pointing at the Wuhan lab, rather than any direct evidence. Most importantly, the general reader should know that all labs researching viruses do research on dangerous viruses. After all there is no incentive to research benign viruses. So the fact that the Wuhan lab worked on coronaviruses is not in itself an indication of any ill-intent. Additionally, the closest relative to SARSCov2 that has been identified (RaTG13) was found in a cave in Mojiang county in Yunnan, over 1,000 km away, with no evidence that it was ever studied in the Wuhan lab. Further, genetic clocks show that…
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RaTG13 and SARSCoV2 diverged almost 50 years ago. The map presented upfront from is also misleading, the early cases clustered around the market not the lab [0]. Furthermore, several different isolates were found in the market, indicating that SARSCoV2 had been circulating before the epidemic took off. [0] The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic. https://www.science.org/doi/10.1126/science.abp8715
igouy
Neutral mention · rule
> … very little evidence exists for the other explanations… Well, there's evidence of transmission from mammals to people — "Sequencing has subsequently shown that mink-to-human transmission also occurred." https://www.science.org/doi/10.1126/science.abe5901 There's evidence of novel coronaviruses occurring in mammals and then infecting people — "In May [2021], researchers reported that two coronaviruses in dogs recombined in Malaysia. The result was a hybrid that infected eight children." https://www.nytimes.com/2021/10/14/science/bat-coronaviruses... There's evidence of "vendors selling live mammals, including raccoon dogs, hog badgers, and red foxes, immediately before…
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the COVID-19 pandemic" at a Wuhan market. https://www.science.org/doi/10.1126/science.abp8715 There's "Multiple positive samples … from one stall known to have sold live mammals, and the water drain proximal to this stall, as well as other sewerages and a nearby wildlife stall on the southwest side of the market, tested positive for SARS-CoV-2." https://www.science.org/doi/10.1126/science.abp8715 Please be more specific.
igouy
Neutral mention · rule
"Trump says that 'if we stop testing right now, we'd have very few cases' of the coronavirus." Apparently "No reports are known to be available for SARS-CoV-2 test results from these mammals at the Huanan market" and "we do not have access to any live animal samples from relevant species" and "The animals on these farms (nearly 1 million) were rapidly released, sold, or killed in early 2020 … apparently without testing for SARS-CoV-2 … Live animals sold at the market … were apparently not sampled either." https://www.science.org/doi/10.1126/science.abp8715
igouy
Neutral mention · rule
I assume "vendors were selling live mammals, including raccoon dogs, hog badgers, and red foxes, immediately before the COVID-19 pandemic" and that was illegal and — at various levels of city and regional government — well known to be happening. https://www.science.org/doi/10.1126/science.abp8715 I guess "The animals on these farms (nearly 1 million) were rapidly released, sold, or killed in early 2020…" because those involved in the illegal trade did not wish to be held responsible for a repeat of SARS-CoV-1.
igouy
Neutral mention · rule
Spelling it out avoids unnecessary misunderstanding, thank you. Apparently "No reports are known to be available for SARS-CoV-2 test results from these mammals at the Huanan market" and "we do not have access to any live animal samples from relevant species" and "The animals on these farms (nearly 1 million) were rapidly released, sold, or killed in early 2020 … apparently without testing for SARS-CoV-2 … Live animals sold at the market … were apparently not sampled either." https://www.science.org/doi/10.1126/science.abp8715 So the evidence you require will never be found. ---- otoh "Multiple positive samples were taken from one stall known to have sold live mammals, and the water drain proximal to this stall, as well as other sewerages and a nearby wildlife stall on the southwest side of the market, tested positive for SARS-CoV-2."
DiogenesKynikos
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The early cases were very heavily concentrated around the Huanan wet market, but not around the lab, which is on the other side of the Wuhan, a pretty massive city.[0] If the virus had come from the lab, you'd expect the early cases to cluster around the lab. Instead, they were centered around a wet market, just like the early cases of the original SARS were back in 2002. This is completely aside from the other reasons that make a lab leak extremely unlikely. It's public knowledge which viruses the lab in Wuhan works with. The lab regularly publishes its work, lab members go to conferences to present their work, there are international researchers at the institute in…
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Wuhan. There would have been no reason at all for them to hide SARS-CoV-2 prior to the pandemic, and there is simply no shred of evidence that they had SARS-CoV-2. Finally, I would just encourage anyone who's wondering how much stock to put in Ebright's claims to scroll through his Twitter account. The online persona he cultivates is, to put it very politely, that of a troll. 0. https://doi.org/10.1126/science.abp8715
DiogenesKynikos
Neutral mention · rule
It started at a wet market on the other side of the city. That's been very solidly established now. The early cases were very heavily concentrated around the wet market, but not around the lab, which is more than 10 km away.[0] > a lab that studies the virus The lab did not study SARS-CoV-2. It studied viruses that are about 20% different from SARS-CoV-2. We know what viruses they were working with, because they publish papers, go to scientific conferences, etc. > they've yet to find the original bat population spreading it It took about 10 years to find the bat population that the original SARS came from. In the last two years, researchers have gotten closer to the origin of SARS-CoV-2, which appears to be somewhere in southwest China or northern Laos. 0. https://doi.org/10.1126/science.abp8715

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